Build a graph object from a data frame

Usage

build_graph_from_df(
  df,
  node_annotation = NULL,
  directed = F,
  module.method = c("Fast_greedy", "Walktrap", "Edge_betweenness", "Spinglass"),
  top_modules = 15,
  seed = 1115
)

Arguments

df: Data frame. Edge list with columns from, to, and optionally weight. If weight is absent, an unweighted graph is constructed.
node_annotation: Data Frame The annotation file of nodes in network
directed: Logical (default: FALSE). Whether edges between nodes are directed.
module.method: Character Module analysis methods contains "Fast_greedy", "Walktrap", "Edge_betweenness", "Spinglass"
top_modules: Integer. Number of top-ranked modules to select.
seed: Integer (default = 1115). Random seed for reproducibility.

Value

An graph object representing the correlation network. Node/edge attributes include correlation statistics and (optionally) module labels.

Examples

NULL
#> NULL