Package index • ggNetView

All functions

build_graph_from_adj_mat(): Build a correlation-based network from a adjacency matrix

build_graph_from_df(): Build a graph object from a data frame

build_graph_from_enrichGO(): Build a graph object from GO enrichment analysis

build_graph_from_igraph(): Build a graph object from a graph object

build_graph_from_mat(): Build a correlation-based network from a matrix

build_graph_from_module(): Build a graph object from a data frame and module Info

build_graph_from_pie(): Build a pie graph object from a data frame

build_graph_from_wgcna(): Build a graph object from WGCNA result

export_ggnetview(): Save a ggNetView with sensible defaults

get_info_from_graph(): Extract node and edge information from graph object

get_network_topology(): Create network topology

get_network_topology_parallel(): Create network topology in parallel

get_palette(): Generate a named color palette for discrete classes

get_sample_subgraph_topology(): Create network topology

get_subgraph(): Extract subgrah from graph object

ggNetView(): Visualize a network with custom layouts

ggNetView_RMT(): One-shot, non-interactive RMT threshold scan with auto selection

ggNetView_multi(): Visualize network with custom layouts in different samples

ggNetView_multi_link(): Visualize multiple networks and show the connections between them to highlight key members within the networks

gglink_heatmap_triple(): Visualize multi-orientation environmental–species correlation heatmaps2

gglink_heatmaps(): Visualize multi-orientation environmental–species correlation heatmaps

order_graph(): Reorder the Modularity from graph object

scale_color_ggnetview(): Custom discrete color scale for ggNetView

scale_fill_ggnetview(): Custom discrete fill scale for ggNetView

theme_ggnetview(): ggNetView Theme

trans_TOM_in_WGCNA(): Translate TOM matrin to create graph object