Build a graph object from Two numeric matrix

Build a graph object from Two numeric matrix

Usage

build_graph_from_double_mat_with_module(
  mat1,
  mat2,
  node_annotation = NULL,
  directed = F,
  top_modules = 15,
  seed = 1115
)

Arguments

mat1

Numeric matrix. A numeric matrix with samples in colums and variables in rows

mat2

Numeric matrix. A numeric matrix with samples in colums and variables in rows

node_annotation

Data frame. Optional node annotation table, containing metadata such as taxonomy or functional categories.

directed

Logical (default: FALSE). Whether edges between nodes are directed.

top_modules

Integer. Number of top-ranked modules to retain for downstream visualization or analysis.

seed

Integer (default = 1115). Random seed for reproducibility.

Value

A graph object representing the correlation-based two numeric matrix.

Examples

if (FALSE) { # \dontrun{
# `node_annotation` must contain a `Modularity` column that assigns each
# node (rownames of `mat1` and `mat2`) to a module.
obj <- build_graph_from_double_mat_with_module(
  mat1            = mat1,
  mat2            = mat2,
  node_annotation = node_annotation
)
} # }