Create network topology — get_sample_subgraph

Generates a data frame containing network topology information from either a pre-built graph object or directly from an adjacency matrix.

Usage

get_sample_subgraph_topology(
  graph_obj,
  mat = NULL,
  transfrom.method = c("none", "scale", "center", "log2", "log10", "ln", "rrarefy",
    "rrarefy_relative"),
  r.threshold = 0.7,
  p.threshold = 0.05,
  method = c("WGCNA", "SpiecEasi", "SPARCC", "cor"),
  cor.method = c("pearson", "kendall", "spearman"),
  proc = c("Bonferroni", "Holm", "Hochberg", "SidakSS", "SidakSD", "BH", "BY", "ABH",
    "TSBH"),
  bootstrap = 100
)

Arguments

graph_obj: An graph object from build_graph_from_mat or build_graph_from_df. The network object to be visualized.
mat: Numeric Matrix The matrix to build graph_obj
bootstrap: Numeric (default = 100). Number of bootstrap iterations for stability analysis

Value

data frame of network topolog

Examples

NULL
#> NULL