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Build a graph object from WGCNA result

Source: R/build_graph_from_wgcna.R
build_graph_from_wgcna.Rd

Build a graph object from WGCNA result

Usage

build_graph_from_wgcna(
  wgcna_tom,
  module = NULL,
  node_annotation = NULL,
  directed = F,
  seed = 1115
)

Arguments

wgcna_tom

WGCNA TOM matrix.

module

Module data frame

node_annotation

Data Frame The annotation file of nodes in network

directed

Logical (default: FALSE). Whether edges between nodes are directed.

seed

nteger (default = 1115). Random seed for reproducibility.

Value

An graph object representing the correlation network. Node/edge attributes from WGCNA TOM matrix (optionally) module labels.

Examples

if (FALSE) { # \dontrun{
# `wgcna_tom` is a long-format TOM edge list (from, to, weight)
# produced by `trans_TOM_in_WGCNA()`, and `module` is the WGCNA
# module-assignment data frame with columns (ID, Module).
obj <- build_graph_from_wgcna(
  wgcna_tom = wgcna_tom,
  module    = module
)
} # }