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Example OTU abundance table

Source: R/data.R
otu_tab.Rd

A microbial Operational Taxonomic Unit (OTU) abundance matrix used by the package examples. Rows are OTUs and columns are samples.

Usage

otu_tab

Format

A `data.frame` with 2,859 rows (OTUs) and 18 columns (samples). Cell values are raw read counts.

Source

Internal example data shipped with ggNetView.

Examples

data(otu_tab)
otu_tab[1:5, 1:5]
#>        KO1  KO2  KO3  KO4  KO5
#> ASV_1 1113 1968  816 1372 1062
#> ASV_2 1922 1227 2355 2218 2885
#> ASV_3  568  460  899  902 1226
#> ASV_4 1433  400  535  759 1287
#> ASV_6  882  673  819  888 1475