Translate TOM matrin to create graph object — trans_TOM_in_WGCNA • ggNetView

Translate TOM matrin to create graph object

Usage

trans_TOM_in_WGCNA(TOM, mat, threshold = NULL)

Arguments

TOM: matrix TOM matrix from WGCNA result
mat: matrix matrox to WGCNA analysis
threshold: numeric the threshold in weight

Value

A Data frame contain from, to and weight

Examples

if (FALSE) { # \dontrun{
# `TOM` is a topological overlap matrix from WGCNA and `mat` is the
# expression matrix used to compute it.
edge_df <- trans_TOM_in_WGCNA(TOM = TOM, mat = mat, threshold = 0.1)
head(edge_df)
} # }